Jhonatan Contreras, M.Sc.
Curriculum Vitae
October 2017 | September 2021 | Research Associate in the Computer Vision Group, Friedrich-Schiller-Universität Jena and Citizen Science Lab, DLR Institute of Data Science |
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August 2017 | October 2017 | Professor at the Biomedical Engineering Department University Manuela Beltrán |
October 2016 | July 2017 | Professor and researcher at the project: “Young leaders and excellent of the new Chocó” Technological University of Choco “Diego Luis Cordoba” (UTCH), Fundación Ceiba |
Master Thesis: “A comparison between classical object based methods and Conditional Random Fields for remote sensing images” | ||
until 2016 | M.Sc. in Electrical Engineering Pontifical Catholic University of Rio de Janeiro – Brazil | |
Diploma Thesis: “Solution to a system of nonlinear equations, using a strategy based on the harmony search algorithm” | ||
until 2013 | B.Sc. in Electronic Engineering University Industrial of Santander -Colombia, 2013 |
Research Interests
- Deep Learning
- Citizen Science
- Semantic Segmentation and unsupervised Segmentation
- Processing image 3D point clouds
- Probabilistic Graphical Models
Publications
2020
Jhonatan Contreras, Sven Sickert, Joachim Denzler:
Region-based Edge Convolutions with Geometric Attributes for the Semantic Segmentation of Large-scale 3D Point Clouds.
IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing. 13 (1) : pp. 2598-2609. 2020.
[bibtex] [pdf] [web] [doi] [abstract]
Region-based Edge Convolutions with Geometric Attributes for the Semantic Segmentation of Large-scale 3D Point Clouds.
IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing. 13 (1) : pp. 2598-2609. 2020.
[bibtex] [pdf] [web] [doi] [abstract]
In this paper, we present a semantic segmentation framework for large-scale 3D point clouds with high spatial resolution. For such data with huge amounts of points, the classification of each individual 3D point is an intractable task. Instead, we propose to segment the scene into meaningful regions as a first step. Afterward, we classify these segments using a combination of PointNet and geometric deep learning. This two-step approach resembles object-based image analysis. As an additional novelty, we apply surface normalization techniques and enrich features with geometric attributes. Our experiments show the potential of this approach for a variety of outdoor scene analysis tasks. In particular, we are able to reach 89.6\% overall accuracy and 64.4\% average intersection over union (IoU) in the Semantic3D benchmark. Furthermore, we achieve 66.7\% average IoU on Paris-Lille-3D. We also successfully apply our approach to the automatic semantic analysis of forestry data.
2019
Jhonatan Contreras, Joachim Denzler:
Edge-Convolution Point Net For Semantic Segmentation Of Large-Scale Point Clouds.
IEEE International Geoscience and Remote Sensing Symposium (IGARSS). Pages 5236-5239. 2019.
[bibtex] [web] [doi] [abstract]
Edge-Convolution Point Net For Semantic Segmentation Of Large-Scale Point Clouds.
IEEE International Geoscience and Remote Sensing Symposium (IGARSS). Pages 5236-5239. 2019.
[bibtex] [web] [doi] [abstract]
We propose a deep learning-based framework which can manage large-scale point clouds of outdoor scenes with high spatial resolution. Analogous to Object-Based Image Analysis (OBIA), our approach segments the scene by grouping similar points together to generate meaningful objects. Later, our net classifies segments instead of individual points using an architecture inspired by PointNet, which applies Edge convolutions, making our approach efficient. Usually, Light Detection and Ranging (LiDAR) data do not come together with RGB information. This approach was trained using both RBG and RGB+XYZ information. In some circumstances, LiDAR data presents patterns that do not correspond to the surface object. This mainly occurs when objects partially block beans of light, to address this issue, normalized elevation was included in the analysis to make the model more robust.
Jhonatan Contreras, Sven Sickert, Joachim Denzler:
Automatically Estimating Forestal Characteristics in 3D Point Clouds using Deep Learning.
iDiv Annual Conference. 2019. Poster
[bibtex] [web] [abstract]
Automatically Estimating Forestal Characteristics in 3D Point Clouds using Deep Learning.
iDiv Annual Conference. 2019. Poster
[bibtex] [web] [abstract]
Biodiversity changes can be monitored using georeferenced and multitempo-ral data. Those changes refer to the process of automatically identifying differ-ences in the measurements computed over time. The height and the Diameterat Breast Height of the trees can be measured at different times. The mea-surements of individual trees can be tracked over the time resulting in growthrates, tree survival, among other possibles applications. We propose a deeplearning-based framework for semantic segmentation, which can manage largepoint clouds of forest areas with high spatial resolution. Our method divides apoint cloud into geometrically homogeneous segments. Then, a global feature isobtained from each segment, applying a deep learning network called PointNet.Finally, the local information of the adjacent segments is included through anadditional sub-network which applies edge convolutions. We successfully trainand test in a data set which covers an area with multiple trees. Two addi-tional forest areas were also tested. The semantic segmentation accuracy wastested using F1-score for four semantic classes:leaves(F1 = 0.908),terrain(F1 = 0.921),trunk(F1 = 0.848) anddead wood(F1 = 0.835). Furthermore,we show how our framework can be extended to deal with forest measurementssuch as measuring the height of the trees and the DBH.
2014
Jhonatan Contreras, Ivan Amaya, Rodrigo Correa:
An Improved Variant of the Conventional Harmony Search Algorithm.
Applied Mathematics and Computation. 227 (1) : pp. 821-830. 2014.
[bibtex] [web] [doi] [abstract]
An Improved Variant of the Conventional Harmony Search Algorithm.
Applied Mathematics and Computation. 227 (1) : pp. 821-830. 2014.
[bibtex] [web] [doi] [abstract]
The Harmony Search algorithm (HS) has been used for optimization in different fields, and despite the relative short time it has been around, it already has many variants. This article presents a new modification of HS, based on variable parameters, which is able to yield better results than previously reported data, and with the additional benefit of not requiring prior knowledge of the maximum number of iterations. In this research, a comparison is made with the original HS algorithm, and with its improved version (i.e. IHS), finding that the proposed variants not only reduce convergence time of the algorithm, but they also increase its precision. Some commonly used benchmark functions were used as a testing scenario, and the performance of the novel approach is evaluated for an objective function in up to 1000D, where it was found to converge appropriately. These findings are important since they indicate that the proposed version could be used for different kinds of optimization problems, thus allowing a broader use of the HS algorithm.